医学自然语言处理(NLP)相关论文汇总之 ACL 2022
更多关于中文医疗自然语言处理的资源和论文汇总，请访问我的GitHub相关主页https://github.com/NiceSkyWang/Chinese_Medical_Natural_Language_Processing_Resources_and_Papers。最近重新整理一下仓库，把对应会议的论文的PDF汇总下载，有需要的可以直接从仓库下载。
文本分类baseline仓库链接：https://github.com/LovelyDayWang/Summary-of-Text-Classification-Models-PyTorch，欢迎star～
ACL 2022
本次整理共包含8篇主会长文，一篇主会短文，43篇bio workshop论文，5篇其他workshop论文，4篇finding论文。
评测比赛
CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark
CBLUE：中国生物医学语言理解评估基准
论文链接：https://aclanthology.org/2022.acl-long.544/
文本生成
Discriminative Marginalized Probabilistic Neural Method for Multi-Document Summarization of Medical Literature
医学文献多文档摘要的判别边缘化概率神经方法
论文链接：https://aclanthology.org/2022.acl-long.15/
The patient is more dead than alive: exploring the current state of the multi-document summarisation of the biomedical literature
病人生不如死：探索生物医学文献多文献综述的现状
论文链接：https://aclanthology.org/2022.acl-long.350/
Position-based Prompting for Health Outcome Generation
基于位置的健康结果生成提示
论文地址：https://aclanthology.org/2022.bionlp-1.3/
Zero-Shot Aspect-Based Scientific Document Summarization using Self-Supervised Pre-training
使用自我监督预训练的基于零样本方面的科学文档摘要
论文链接：https://aclanthology.org/2022.bionlp-1.5/
Memory-aligned Knowledge Graph for Clinically Accurate Radiology Image Report Generation
用于生成临床准确放射影像报告的内存对齐知识图
论文链接：https://aclanthology.org/2022.bionlp-1.11/
文本分类
KenMeSH: Knowledge-enhanced End-to-end Biomedical Text Labelling
KenMeSH:知识增强的端到端生物医学文本标签
论文链接：https://aclanthology.org/2022.acl-long.210/
ICDBigBird: A Contextual Embedding Model for ICD Code Classification
ICDBigBird：用于 ICD 代码分类的上下文嵌入模型
论文链接：https://aclanthology.org/2022.bionlp-1.32/
Horses to Zebras: Ontology-Guided Data Augmentation and Synthesis for ICD-9 Coding
从马到斑马：用于 ICD-9 编码的本体引导数据增强和合成
论文链接：https://aclanthology.org/2022.bionlp-1.39/
Model Distillation for Faithful Explanations of Medical Code Predictions
医学代码预测忠实解释的模型蒸馏
论文链接：https://aclanthology.org/2022.bionlp-1.41/
A Novel Framework Based on Medical Concept Driven Attention for Explainable Medical Code Prediction via External Knowledge
一种基于医学概念驱动注意力的新框架，用于通过外部知识进行可解释的医学代码预测
论文链接：https://aclanthology.org/2022.findings-acl.110/
Incremental Intent Detection for Medical Domain with Contrast Replay Networks
具有对比重放网络的医学领域的增量意图检测
论文链接：https://aclanthology.org/2022.findings-acl.280/
Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding
代码同义词很重要：用于自动 ICD 编码的多个同义词匹配网络
论文链接：https://aclanthology.org/2022.acl-short.91/
Leveraging Task Transferability to Meta-learning for Clinical Section Classification with Limited Data
利用有限数据的临床部分分类的元学习任务可迁移性
论文链接：https://aclanthology.org/2022.acl-long.461/
预训练模型
Rewire-then-Probe: A Contrastive Recipe for Probing Biomedical Knowledge of Pre-trained Language Models
Rewire-then-Probe：探索预训练语言模型的生物医学知识的对比配方
论文链接：https://aclanthology.org/2022.acl-long.329/
BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model
BioBART：生物医学生成语言模型的预训练和评估
论文链接：https://aclanthology.org/2022.bionlp-1.9/
Pretrained Biomedical Language Models for Clinical NLP in Spanish
用于西班牙语临床 NLP 的预训练生物医学语言模型
论文链接：https://aclanthology.org/2022.bionlp-1.19/
Evaluating Biomedical Word Embeddings for Vocabulary Alignment at Scale in the UMLS Metathesaurus Using Siamese Networks
使用 Siamese 网络在 UMLS Metathesaurus 中大规模评估生物医学词嵌入以实现词汇对齐
论文链接：https://aclanthology.org/2022.insights-1.11/
多模态
ViLMedic: a framework for research at the intersection of vision and language in medical AI
ViLMedic：医学人工智能中视觉和语言交叉研究的框架
论文链接：https://aclanthology.org/2022.acl-demo.3/
数据集
Dataset Debt in Biomedical Language Modeling
生物医学语言建模中的数据集债务
论文链接：https://aclanthology.org/2022.bigscience-1.10/
BanglaBioMed: A Biomedical Named-Entity Annotated Corpus for Bangla (Bengali)
BanglaBioMed：Bangla（孟加拉语）的生物医学命名实体注释语料库
论文链接：https://aclanthology.org/2022.bionlp-1.31/
对话
Incorporating Medical Knowledge to Transformer-based Language Models for Medical Dialogue Generation
将医学知识结合到基于 Transformer 的语言模型中以生成医学对话
论文地址：https://aclanthology.org/2022.bionlp-1.10/
Conversational Bots for Psychotherapy: A Study of Generative Transformer Models Using Domain-specific Dialogues
用于心理治疗的对话机器人：使用特定领域对话的生成式变压器模型的研究
论文链接：https://aclanthology.org/2022.bionlp-1.27/
Doctor XAvIer: Explainable Diagnosis on Physician-Patient Dialogues and XAI Evaluation
XAvIer 医生：医患对话和 XAI 评估的可解释诊断
论文链接：https://aclanthology.org/2022.bionlp-1.33/
QA
Explainable Assessment of Healthcare Articles with QA
使用 QA 对医疗保健文章进行可解释的评估
论文链接：https://aclanthology.org/2022.bionlp-1.1/
Data Augmentation for Biomedical Factoid Question Answering
生物医学事实问答的数据增强
论文链接：https://aclanthology.org/2022.bionlp-1.6/
Overview of the MedVidQA 2022 Shared Task on Medical Video Question-Answering
MedVidQA 2022 医学视频问答共享任务概述
论文链接：https://aclanthology.org/2022.bionlp-1.25/
信息抽取
A sequence-to-sequence approach for document-level relation extraction
一种用于文档级关系提取的序列到序列方法
论文链接：https://aclanthology.org/2022.bionlp-1.2/
Slot Filling for Biomedical Information Extraction
用于生物医学信息提取的槽填充
论文链接：https://aclanthology.org/2022.bionlp-1.7/
Simple Semantic-based Data Augmentation for Named Entity Recognition in Biomedical Texts
用于生物医学文本中命名实体识别的简单基于语义的数据增强
论文链接：https://aclanthology.org/2022.bionlp-1.12/
Auxiliary Learning for Named Entity Recognition with Multiple Auxiliary Biomedical Training Data
具有多个辅助生物医学训练数据的命名实体识别辅助学习
论文链接：https://aclanthology.org/2022.bionlp-1.13/
Biomedical NER using Novel Schema and Distant Supervision
使用新模式和远程监督的生物医学 NER
论文链接：https://aclanthology.org/2022.bionlp-1.15/
Improving Supervised Drug-Protein Relation Extraction with Distantly Supervised Models
使用远程监督模型改进监督药物-蛋白质关系提取
论文链接:https://aclanthology.org/2022.bionlp-1.16/
Named Entity Recognition for Cancer Immunology Research Using Distant Supervision
使用远程监督的癌症免疫学研究的命名实体识别
论文链接：https://aclanthology.org/2022.bionlp-1.17/
Intra-Template Entity Compatibility based Slot-Filling for Clinical Trial Information Extraction
用于临床试验信息提取的基于模板内实体兼容性的插槽填充
论文链接：https://aclanthology.org/2022.bionlp-1.18/
Improving Romanian BioNER Using a Biologically Inspired System
使用仿生系统改进罗马尼亚 BioNER
论文链接：https://aclanthology.org/2022.bionlp-1.30/
DISTANT-CTO: A Zero Cost, Distantly Supervised Approach to Improve Low-Resource Entity Extraction Using Clinical Trials Literature
DISTANT-CTO：使用临床试验文献改进低资源实体提取的零成本、远程监督方法
论文链接：https://aclanthology.org/2022.bionlp-1.34/
Extraction of Diagnostic Reasoning Relations for Clinical Knowledge Graphs
临床知识图诊断推理关系的提取
论文链接：https://aclanthology.org/2022.acl-srw.33/
MIMICause: Representation and automatic extraction of causal relation types from clinical notes
MIMICause：从临床记录中表示和自动提取因果关系类型
论文链接：https://aclanthology.org/2022.findings-acl.63/
事件抽取
Low Resource Causal Event Detection from Biomedical Literature
来自生物医学文献的低资源因果事件检测
论文链接：https://aclanthology.org/2022.bionlp-1.24/
BEEDS: Large-Scale Biomedical Event Extraction using Distant Supervision and Question Answering
BEEDS：使用远程监督和问答的大规模生物医学事件提取
论文链接：https://aclanthology.org/2022.bionlp-1.28/
Comparing Encoder-Only and Encoder-Decoder Transformers for Relation Extraction from Biomedical Texts: An Empirical Study on Ten Benchmark Datasets
比较仅编码器和编码器-解码器转换器从生物医学文本中提取关系：对十个基准数据集的实证研究
论文链接：https://aclanthology.org/2022.bionlp-1.37/
其他
How You Say It Matters: Measuring the Impact of Verbal Disfluency Tags on Automated Dementia Detection
你怎么说它很重要：测量语言不流畅标签对自动痴呆症检测的影响
论文链接：https://aclanthology.org/2022.bionlp-1.4/
Automatic Biomedical Term Clustering by Learning Fine-grained Term Representations
通过学习细粒度术语表示的自动生物医学术语聚类
论文链接：https://aclanthology.org/2022.bionlp-1.8/
SNP2Vec: Scalable Self-Supervised Pre-Training for Genome-Wide Association Study
SNP2Vec：用于全基因组关联研究的可扩展自我监督预训练
论文链接：https://aclanthology.org/2022.bionlp-1.14/
Few-Shot Cross-lingual Transfer for Coarse-grained De-identification of Code-Mixed Clinical Texts
用于代码混合临床文本的粗粒度去识别的 Few-Shot 跨语言迁移
论文链接：https://aclanthology.org/2022.bionlp-1.20/
VPAI_Lab at MedVidQA 2022: A Two-Stage Cross-modal Fusion Method for Medical Instructional Video Classification
MedVidQA 2022 上的 VPAI_Lab：用于医学教学视频分类的两阶段跨模式融合方法
论文链接：https://aclanthology.org/2022.bionlp-1.21/
GenCompareSum: a hybrid unsupervised summarization method using salience
GenCompareSum：一种使用显着性的混合无监督摘要方法
论文链接：https://aclanthology.org/2022.bionlp-1.22/
BioCite: A Deep Learning-based Citation Linkage Framework for Biomedical Research Articles
BioCite：基于深度学习的生物医学研究文章引用链接框架
论文链接：https://aclanthology.org/2022.bionlp-1.23/
Inter-annotator agreement is not the ceiling of machine learning performance: Evidence from a comprehensive set of simulations
注释者间协议不是机器学习性能的天花板：来自一组全面模拟的证据
论文链接：https://aclanthology.org/2022.bionlp-1.26/
Data Augmentation for Rare Symptoms in Vaccine Side-Effect Detection
疫苗副作用检测中罕见症状的数据增强
论文链接：https://aclanthology.org/2022.bionlp-1.29/
EchoGen: Generating Conclusions from Echocardiogram Notes
EchoGen：从超声心动图笔记中得出结论
论文链接：https://aclanthology.org/2022.bionlp-1.35/
Quantifying Clinical Outcome Measures in Patients with Epilepsy Using the Electronic Health Record
用电子健康记录量化癫痫患者的临床结果测量
论文链接：https://aclanthology.org/2022.bionlp-1.36/
Utility Preservation of Clinical Text After De-Identification
去识别后临床文本的实用保存
论文链接：https://aclanthology.org/2022.bionlp-1.38/
Towards Automatic Curation of Antibiotic Resistance Genes via Statement Extraction from Scientific Papers: A Benchmark Dataset and Models
通过从科学论文中提取语句来自动管理抗生素耐药性基因：基准数据集和模型
论文链接：https://aclanthology.org/2022.bionlp-1.40/
Towards Generalizable Methods for Automating Risk Score Calculation
迈向自动化风险评分计算的通用方法
论文链接：https://aclanthology.org/2022.bionlp-1.42/
DoSSIER at MedVidQA 2022: Text-based Approaches to Medical Video Answer Localization Problem
MedVidQA 2022 上的 DoSSIER：基于文本的医学视频答案定位问题方法
论文链接：https://aclanthology.org/2022.bionlp-1.43/
Investigating the Medical Coverage of a Translation System into Pictographs for Patients with an Intellectual Disability
调查翻译系统的医疗覆盖范围为智障患者的象形文字
论文链接：https://aclanthology.org/2022.slpat-1.6/
Predicting Intervention Approval in Clinical Trials through Multi-Document Summarization
通过多文档摘要预测临床试验中的干预批准
论文链接：https://aclanthology.org/2022.acl-long.137/
Improving the Generalizability of Depression Detection by Leveraging Clinical Questionnaires
利用临床问卷提高抑郁症检测的普遍性
论文链接：https://aclanthology.org/2022.acl-long.578/
RuCCoN: Clinical Concept Normalization in Russian
RuCCoN：俄语临床概念标准化